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Data deduplication involves finding and removing duplication within data without compromising its fidelity or integrity. The goal is to store more data in less space by segmenting files into small variable-sized chunks (32–128 KB), identifying duplicate chunks, and maintaining a single copy of each chunk. Redundant copies of the chunk are replaced by a reference to the single copy. The chunks are compressed and then organized into special container files in the System Volume Information folder. The result is an on-disk transformation of each file as shown in Figure 1. After deduplication, files are no longer stored as independent streams of data, and they are replaced with stubs that point to data blocks that are stored within a common chunk store. Because these files share blocks, those blocks are only stored once, which reduces the disk space needed to store all files. During file access, the correct blocks are transparently assembled to serve the data without calling the application or the user having any knowledge of the on-disk transformation to the file. This enables administrators to apply deduplication to files without having to worry about any change in behavior to the applications or impact to users who are accessing those files.

DedupOn-disk transformation of files during data deduplication

After a volume is enabled for deduplication and the data is optimized, the volume contains the following:

  •  Unoptimized files. For example, unoptimized files could include files that do not meet the selected file-age policy setting, system state files, alternate data streams, encrypted files, files with extended attributes, files smaller than 32 KB, other reparse point files, or files in use by other applications (the “in use” limit is removed in Windows Server 2012 R2).
  • Optimized files. Files that are stored as reparse points that contain pointers to a map of the respective chunks in the chunk store that are needed to restore the file when it is requested.
  • Chunk store. Location for the optimized file data.
  • Additional free space. The optimized files and chunk store occupy much less space than they did prior to optimization.

To cope with data storage growth in the enterprise, administrators are consolidating servers and making capacity scaling and data optimization key goals. Data deduplication provides practical ways to achieve these goals, including:

  •  Capacity optimization. Data deduplication stores more data in less physical space. It achieves greater storage efficiency than was possible by using features such as Single Instance Storage (SIS) or NTFS compression. Data deduplication uses subfile variable-size chunking and compression, which deliver optimization ratios of 2:1 for general file servers and up to 20:1 for virtualization data.
  • Scale and performance. Data deduplication is highly scalable, resource efficient, and nonintrusive. It can process up to 50 MB per second in Windows Server 2012 R2, and about 20 MB of data per second in Windows Server 2012. It can run on multiple volumes simultaneously without affecting other workloads on the server. Low impact on the server workloads is maintained by throttling the CPU and memory resources that are consumed. If the server gets very busy, deduplication can stop completely. In addition, administrators have the flexibility to run data deduplication jobs at any time, set schedules for when data deduplication should run, and establish file selection policies.
  •  Reliability and data integrity. When data deduplication is applied, the integrity of the data is maintained. Data Deduplication uses checksum, consistency, and identity validation to ensure data integrity. For all metadata and the most frequently referenced data, data deduplication maintains redundancy to ensure that the data is recoverable in the event of data corruption.
  • Bandwidth efficiency with BranchCache. Through integration with BranchCache, the same optimization techniques are applied to data transferred over the WAN to a branch office. The result is faster file download times and reduced bandwidth consumption.
  • Optimization management with familiar tools. Data deduplication has optimization functionality built into Server Manager and Windows PowerShell. Default settings can provide savings immediately, or administrators can fine-tune the settings to see more gains. One can easily use Windows PowerShell cmdlets to start an optimization job or schedule one to run in the future. Installing the Data Deduplication feature and enabling deduplication on selected volumes can also be accomplished by using an Unattend.xml file that calls a Windows PowerShell script and can be used with Sysprep to deploy deduplication when a system first boots.

Plan to Deploy Data Deduplication

Install and Configure Data Deduplication

Monitor and Report for Data Deduplication

Deduplicating Microsoft System Center 2012 R2 DPM storage :

Business benefits
Using deduplication with DPM can result in large savings. The amount of space saved by deduplication when optimizing DPM backup data varies depending on the type of data being backed up. For example, a backup of an encrypted database server may result in minimal savings since any duplicate data is hidden by the encryption process. However backup of a large Virtual Desktop Infrastructure (VDI) deployment can result in very large savings in the range of 70-90+% range, since there is typically a large amount of data duplication between the virtual desktop environments. In the configuration described in this topic Microsoft ran a variety of test workloads and saw savings ranging between 50% and 90%.

Recommended deployment
To deploy DPM as a virtual machine backing up data to a deduplicated volume Microsoft recommend the following deployment topology:

  • DPM running in a virtual machine in a Hyper-V host cluster.
  • DPM storage using VHD/VHDX files stored on an SMB 3.0 share on a file server.
  • For this example deployment Microsoft configured the file server as a scaled-out file server (SOFS) deployed using storage volumes configured from Storage Spaces pools built using directly connected SAS drives. Note that this deployment ensures performance at scale.

DeDup DPM storage

Note the following:

  • This scenario is supported for DPM 2012 R2
  • The scenario is supported for all workloads for which data can be backed up by DPM 2012 R2.
  • All the Windows File Server nodes on which DPM virtual hard disks reside and on which deduplication will be enabled must be running Windows Server 2012 R2 with Update Rollup November 2014.

Sizing Volumes for Data Deduplication in Windows Server

More information on Deduplicating DPM storage you can find here

Microsoft System Center DPM Blog



Author: James van den Berg

I'm Microsoft Architect and ICT Specialist and Microsoft MVP System Center Cloud and Datacenter Management

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